Resistance to biotic and abiotic stress in potato: the origin of the genes and corresponding molecular markers

Islam, Saiful; Li, Jiana; Rahman, Mohammad Ataur; Xie, Fangru; Song, Botao; Nie, Bihua

doi:10.1186/s42483-023-00222-9

Phytopathology Research

Table 1 Association of markers with viruses, late blight, and potato cyst nematode resistance genes in potato

From: Resistance to biotic and abiotic stress in potato: the origin of the genes and corresponding molecular markers

SL	Marker Type	Marker Name	Forward sequence	Reverse sequence	Gene	ER	References
1	SSR	STM 0003	GGAGAATCATAACAACCAG	AATTGTAACTCTGTGTGTGTG	Ry_sto	PVY	Bhardwaj et al. (2019), Slater et al. (2020)
2	ESTS	Yes3-3A	TAACTCAAGCGGAATAACCC	AAATTCACCTGTTTACATGCTTCTTGTG	Ry_sto	PVY	Bhardwajet al. (2019), Song and Schwarzfische, (2008)
3	ESTS	Yes3-3B	TAACTCAAGCGGAATAACCC	CATGAGATTGCCTTTGGTTA	Ry_sto	PVY	Song and Schwarzfische (2008)
4	SCAR	RYSC3	ATACACTCATCTAAATTTGATGG	AGGATATACGGCATCATTTTTCCGA	Ry_adg	PVY	Kneib et al. (2017), Sharma et al. (2014)
5	AFLP	M6	ACATGATATAAGTTGATATGGAGAAT	GTGCTTTGTCTTTTCTGCATGTA	Ry_adg	PVY	Herrera et al. (2018)
6	AFLP	M45	GACTGCGTACATGCAGCT	GATGAGTCCTGAGTAAGGA	Ry_adg	PVY	Kneib et al. (2017), Slater et al. (2020)
7	STS	RY186	TGGTAGGGATATTTTCCTTAGA	GCAAATCCTAGGTTATCAACTCA	Ry_chc	PVY	Biryukova et al. (2020), Rogozina et al. (2019)
8	SCAR	Ry364	CTATTATAAGTCTGGTACTAGGACG	GGCTATATGTTCAATGAATTCATGCTAA	Ry_chc	PVY	Klimenko et al. (2019)
9	PCR	5Rx1	TCAGGGCAAAACCCTAACAC	ATCGGCCTAGAGTGACATCG	Rx1	PVX	Shaikhaldein et al. (2018)
10	PCR	PVX	ATCTTGGTTTGAATACATGG	CACAATATTGGAAGGATTCA	Rx1	PVX	Mori et al. (2011)
11	PCR	106Rx2	GGAGAAATCCTGCAATGTAAC	CTTGTCAAAGAAAGAAGGCCT	Rx2	PVX	Shaikhaldein et al. (2018)
12	RFLP	GP21	GGTTGGTGGCCTATTAGCCATGC	AGTGAGCCAGCATAGCATTACTTG	Rx2	PVX	De Jong et al. (1997)
13	CAPS	SC811	CGAACAAAATACGTAATGCATTGAATAA	GACCT ATATCAGTCCCTTCTAATCCACTAT	Ns	PVS	Flis et al. (2005)
14	SCAR	SCG17-321	ACGACCGACACTCAAATTTGTACAAGAAA	GATGCCCCGACAGAGGAAG	Ns	PVS	Bhardwaj et al. (2019)
15	SCAR	N127	TAGAGAGCATTAAGAAGCTGC	TTTTGCCTACTCCCGGCATG	PLRV1	PLRV	Marczewski et al. (2004), Yermishin et al. (2016)
16	SSR	R1	CACTCGTGACATATCCTCACTA	CAACCCTGGCATGCCACG	R1	LB	Sokolova et al. (2014), Tiwari et al. (2013)
17	SSR	R2	ATGGCTGATGCCTTTCTATCATTTGC	TCACAACATATAATTCCGCTTC	R2	LB	Kim et al. (2012)
18	SSR	SHa	ATCGTTGTCATGCTATGAGATTGTT	CTTCAAGGTAGTGGGCAGTATGCTT	R3a	LB	Huang et al. (2005)
19	SSR	R3b4	GTCGATGAATGCTATGTTTCTCGAGA	ACCAGTTTCTTGCAATTCCAGATTG	R3b	LB	Rietman (2011)
20	SCAR	CosA	CTCATTCAAAATCAGTTTTGATC	GAATGTTGAATCTTTTTGTGAAGG	R1	LB	Bhardwaj et al. (2019), Sharma et al. (2014)
21	SSR	45/ XI	AGAGAGGTTGTTTCCGATAGACC	TCGTTGTAGTTGTCATTCCACAC	Rpi-Smira1	LB	Islam et al. (2022), Tomczynska et al. (2014)
22	SSR	184–81	CCACCGTATGCTCCGCCGTC	GTTCCACTTAGCCTTGTCTTGCTCA	Rpi-Smira2	LB	Blatnik et al. (2022)
23	SCAR	N146	AAGCTCTTGCCTAGTGCTC	AGGCGGAACATGCCATG	H1	PCN	Asano et al. (2012)
24	SCAR	N195	TGGAAATGGCACCCACTA	CATCATGGTTTCACTTGTCAC	H1	PCN	Chekushkina et al. (2020)
25	SCAR	57R	TGCCTGCCTCTCCGATTTCT	GGTTCAGCAAAAGCAAGGACGTG	H1	PCN	Finkers-Tomczak et al. (2009)
26	SCAR	Gro1-4	TCTTTGGAGATACTGATTCTCA	CGACCTAAAATGAAAAGCATCT	Gro1-4	PCN	Asano et al. (2012)
27	STS	Gpa2-2	GCACTTAGAGACTCATTCCA	ACAGATTGTTGGCAGCGAAA	Gpa2	PCN	Asano et al. (2012)

ER Extreme Resistance, PVY potato virus Y, PVX potato virus X, PVA potato virus A, PVS potato virus S, PLRV potato leafroll virus, LB late blight, PCN potato cyst nematode

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