Table 1 Transcription factors studied by gene knockout in M. oryzae

MGG_00021

FZC62

C, G, S

Lu et al. (2014)

MGG_00080

ZFP7

N

Cao et al. (2016)

MGG_00096

FZC63

G, S

Lu et al. (2014)

MGG_00184

HOX2, HTF1

C

Kim et al. (2009), Liu et al. (2010) and Huang et al. (2022b)

MGG_00320

FZC64

N

Lu et al. (2014)

MGG_00329

FZC27

A, S

Lu et al. (2014)

MGG_00342

BZIP1

C

Kong et al. (2015) and Tang et al. (2015)

MGG_00354

HAPB

C, G

Nakajima et al. (2010)

MGG_00373

GCP1

C, G, V

Cao et al. (2016)

MGG_00417

FZC65

S

Lu et al. (2014)

MGG_00494

PRO1

P

Lu et al. (2014), Uchida et al. (2023)

MGG_00501

MSN2, TDG2

A, C, G, I, S, V

Breth et al. (2013) and Zhang et al. (2014)

MGG_00504

NSDC

C, G

Cao et al. (2016)

MGG_00587

BZIP2

C, G

Kong et al. (2015) and Tang et al. (2015)

MGG_00617

VOSA

N

Kim et al. (2014)

MGG_00622

NDT80

Cm, V

Bhatt et al. (2020)

MGG_00660

ZFP1

V

Cao et al. (2016)

MGG_00672

LEU3

C, G, V

Wei et al. (2019) and Que et al. (2020)

MGG_00692

MSTU1

A, C, V

Nishimura et al. (2009)

MGG_08753

MoEITF1

I, V

Cao et al. (2022)

MGG_08850

GTI1

A, C, G, I, S, V

Li et al. (2016)

MGG_01017

CONX3

A, C, V

Cao et al. (2016)

MGG_01057

LDB1

C, G, P, V

Li et al. (2010)

MGG_01127

CONX7

C

Cao et al. (2016)

MGG_01204

MIG1

C, G, I, S, V

Mehrabi et al. (2008)

MGG_01215

COM1

A, C, I, V

Yang et al. (2010)

MGG_01285

TPC1

A, C, G, S

Galhano et al. (2017)

MGG_01414

XLR1

Cm

Battaglia et al. (2013)

MGG_01486

FZC2

N

Lu et al. (2014)

MGG_01518

NIT4, NIR1

C, Nm, S

Wilson et al. (2010) and Lu et al. (2014)

MGG_01620

VELB

C, G, S

Kim et al. (2014)

MGG_01624

FZC3

N

Lu et al. (2014)

MGG_01632

MoNTE1

A, C, G, I, V

Chen et al. (2023)

MGG_01730

HOX3

N

Kim et al. (2009)

MGG_01734

FZC4

S

Lu et al. (2014)

MGG_01776

VRF2

C, V

Cao et al. (2016)

MGG_01779

FZC29

S

Lu et al. (2014)

MGG_01833

FZC5

C, S

Lu et al. (2014)

MGG_01836

FAR1

Cm

Bin Yusof et al. (2014)

MGG_01853

FOX1

N

Park et al. (2014)

MGG_01887

FZC30

S

Lu et al. (2014)

MGG_01990

MoIDI4

N

Kong et al. (2015) and Tang et al. (2015)

MGG_02006

BZIP3

A, C, Cm, G, V

Kong et al. (2015), Tang et al. (2015) and Liu et al. (2022)

MGG_02036

ZFP8

V

Cao et al. (2016)

MGG_02055

CONX4

C

Cao et al. (2016)

MGG_02089

FZC66

S

Lu et al. (2014)

MGG_02289

FZC67

G, S

Lu et al. (2014)

MGG_02377

FZC6

N

Lu et al. (2014)

MGG_02474

GPF2

G, V

Cao et al. (2016)

MGG_02595

FZC7

A

Lu et al. (2014)

MGG_02632

MoFCR3

N

Kong et al. (2015) and Tang et al. (2015)

MGG_02755

NUT1, AREA

Nc

Froeliger and Carpenter (1996) and Wilson et al. (2010)

MGG_02773

MCM1

A, P, S, V

Zhou et al. (2011)

MGG_02775

CONX2

C, V

Cao et al. (2016)

MGG_02865

BZIP4

N

Kong et al. (2015) and Tang et al. (2015)

MGG_02866

FZC31

G, S

Lu et al. (2014)

MGG_02879

FZC8

S

Lu et al. (2014)

MGG_02880

FZC9

N

Lu et al. (2014)

MGG_02962

CNF1

C, M, V

Lu et al. (2014) and Huang et al. (2022b)

MGG_03030

CONX11

C

Cao et al. (2016)

MGG_03133

CONX6

C

Cao et al. (2016)

MGG_03183

CNF4

C, S

Lu et al. (2014)

MGG_03288

BZIP5

A, C

Kong et al. (2015) and Tang et al. (2015)

MGG_03451

GCF6

C, G, V

Cao et al. (2016)

MGG_03463

FZC10

S

Lu et al. (2014)

MGG_03538

WC1

C, V

Kim et al. (2011)

MGG_03581

ZFP9

G

Cao et al. (2016)

MGG_03669

FZC68

S

Lu et al. (2014)

MGG_03711

FZC87

S

Lu et al. (2014)

MGG_03977

COS1

C

Zhou et al. (2009), Cao et al. (2016) and Huang et al. (2022b)

MGG_04000

RFX1

A, C, G, S, V

Sun et al. (2017)

MGG_04009

BZIP6

N

Kong et al. (2015) and Tang et al. (2015)

MGG_04108

TAS1

S

Lu et al. (2014)

MGG_04141

FZC69

A, G, S

Lu et al. (2014)

MGG_04326

FZC70

G, S

Lu et al. (2014)

MGG_04328

ZFP10

G, V

Cao et al. (2016)

MGG_04360

FZC71

S

Lu et al. (2014)

MGG_04387

FZC1

S

Lu et al. (2014)

MGG_04456

ZAP1

C

Fernandez et al. (2012) and Cao et al. (2016)

MGG_04489

MNH6

A, C, G, V

Lu et al. (2007)

MGG_04580

MoHTR3

I, V

Lee et al. (2023)

MGG_04674

FZC32

S

Lu et al. (2014)

MGG_04699

FLB3, MoFLBC

A, C, V

Cao et al. (2016) and Matheis et al. (2017)

MGG_04708

SOM1

C, G, M, P, V

Yan et al. (2011)

MGG_04758

BZIP12

C

Kong et al. (2015) and Tang et al. (2015)

MGG_04843

C19TRF1, FZC11, IRR

Cm

Lu et al. (2014), Jacob et al. (2017) and Wang et al. (2018)

MGG_04853

HOX1, C19TRF2

Cm

Kim et al. (2009) and Jacob et al. (2017)

MGG_04865

ZFP2

G

Cao et al. (2016)

MGG_04933

FZC72

S

Lu et al. (2014)

MGG_05033

FZC33

G, S

Lu et al. (2014)

MGG_05133

CRZ1

C, G, V

Choi et al. (2009), Zhang et al. (2009) and Cao et al. (2016)

MGG_05153

FZC73

G, S

Lu et al. (2014)

MGG_05287

CON7

A, C, V

Odenbach et al. (2007) and Cao et al. (2016)

MGG_05306

MoMEAB

C, G, Nm

Kong et al. (2015) and Tang et al. (2015)

MGG_05343

COD1

C, G, S, V

Chung et al. (2013) and Lu et al. (2014)

MGG_05501

ZFP11

V

Cao et al. (2016)

MGG_05659

CCA1

A, C, G, S, V

Lu et al. (2014)

MGG_05709

CRF1

A, C, Cm, G, V

Cao et al. (2018) and Huang et al. (2023a)

MGG_05714

ZFP3

G

Cao et al. (2016)

MGG_05724

FZC74

S

Lu et al. (2014)

MGG_05829

FZC12

S

Lu et al. (2014)

MGG_05845

FZC75

A, S

Lu et al. (2014)

MGG_05891

FZC13

C, G, S

Lu et al. (2014)

MGG_05959

MoHAPX

N

Kong et al. (2015) and Tang et al. (2015)

MGG_06072

SVF1

C, G

Fu et al. (2023)

MGG_06131

BZIP10

A, C, G, I, V

Kong et al. (2015) and Tang et al. (2015)

MGG_06243

FZC76

S

Lu et al. (2014)

MGG_06258

MoFKH1

C, G, V, S

Park et al. (2014)

MGG_06279

FZC34

S

Lu et al. (2014)

MGG_06285

HOX4

C

Kim et al. (2009)

MGG_06312

FZC35

N

Lu et al. (2014)

MGG_06328

GCF4

C, G

Cao et al. (2016)

MGG_06355

FZC14

C, S

Lu et al. (2014

MGG_06364

GCF7

C, G

Cao et al. (2016)

MGG_06416

FZC36

N

Lu et al. (2014

MGG_06422

HCM1

C, G, S, V

Park et al. (2014

MGG_06455

FZC77

S

Lu et al. (2014)

MGG_06575

CONX9

C

Cao et al. (2016)

MGG_06626

FZC37

C, S

Lu et al. (2014)

MGG_06778

FZC38

N

Lu et al. (2014)

MGG_06832

TDG3, FZC39

N

Breth et al. (2013) and Lu et al. (2014)

MGG_06848

CONX8

C

Cao et al. (2016)

MGG_06898

FLB4, MoMYB1

C, G, S, V

Dong et al. (2015) and Matheis et al. (2017)

MGG_06954

ARA1

Cm

Klaubauf et al. (2016)

MGG_06971

SFL1

A, C, I, V

Li et al. (2011) and Li et al. (2017)

MGG_07011

GPF3

G, V

Cao et al. (2016)

MGG_07013

ZFP12

N

Cao et al. (2016)

MGG_07063

GCC1

C, G, S

Lu et al. (2014) and Huang et al. (2022b)

MGG_07149

GTA1

G, C, S, V

Lu et al. (2014)

MGG_07215

PIG1

M, S

Tsuji et al. (2000), Lu et al. (2014) and Huang et al. (2022b)

MGG_07218

HTFG

N

Oh et al. (2008)

MGG_07269

ZFP13

N

Cao et al. (2016)

MGG_07305

BZIP7

N

Kong et al. (2015) and Tang et al. (2015)

MGG_07339

CONX5

C, V

Cao et al. (2016)

MGG_07437

HOX5

N

Kim et al. (2009)

MGG_07450

-

N

Minh et al. (2023)

MGG_07458

FZC78

N

Lu et al. (2014)

MGG_07534

FZC41

S

Lu et al. (2014)

MGG_07549

FZC42

G, S

Lu et al. (2014)

MGG_07636

FZC79

G, S

Lu et al. (2014)

MGG_07681

FZC28

G, S

Lu et al. (2014)

MGG_07777

FZC43

C, S

Lu et al. (2014)

MGG_07800

FZC15, TAS2

Sm

Lu et al. (2014) and Yun et al. (2017)

MGG_07845

FZC44

G

Lu et al. (2014)

MGG_07925

BZIP11

C

Kong et al. (2015) and Tang et al. (2015)

MGG_08058

MoACEII

G, S

Lu et al. (2014)

MGG_08094

FZC16

S

Lu et al. (2014)

MGG_08130

FZC17

S

Lu et al. (2014)

MGG_08185

FZC45

C, G, S

Lu et al. (2014)

MGG_08199

FAR2

Cm

Bin Yusof et al. (2014)

MGG_08203

MBF1

G, S, V

Fan et al. (2017)

MGG_08212

ATF1

C, S, V

Guo et al. (2010), Kong et al. (2015) and Tang et al. (2015)

MGG_08314

FZC46

G

Lu et al. (2014)

MGG_08361

FZC80

S

Lu et al. (2014)

MGG_08493

CONX10

C

Cao et al. (2016)

MGG_08556

VEA

A, C, V

Kim et al. (2014)

MGG_08777

FZC18

S

Lu et al. (2014)

MGG_08784

FZC47

S

Lu et al. (2014)

MGG_08974

FZC81

S

Lu et al. (2014)

MGG_09010

HAC1

C, G, V

Kong et al. (2015) and Tang et al. (2015)

MGG_09027

FZC49

S

Lu et al. (2014)

MGG_09031

-

N

Oh et al. (2008)

MGG_09200

TDG1

C, V

Breth et al. (2013) and Cao et al. (2016)

MGG_09263

COD2

C, V

Chung et al. (2013)

MGG_09273

FZC50

G, S

Lu et al. (2014)

MGG_09276

CRG1

N

Oh et al. (2008)

MGG_09312

FZC51

S

Lu et al. (2014)

MGG_09676

FZC52

S

Lu et al. (2014)

MGG_09780

ZFP4

N

Cao et al. (2016)

MGG_09829

FZC53

S

Lu et al. (2014)

MGG_09847

ACR1

C

Lau and Hamer (1998) and Nishimura et al. (2000)

MGG_09869

MoSWI6

C, G, M, S, V

Qi et al. (2012)

MGG_09950

FZC54

G, S

Lu et al. (2014)

MGG_10150

PACC

C, S, V

Landraud et al. (2013)

MGG_10197

TRA1

A, V, S

Breth et al. (2013) and Lu et al. (2014)

MGG_10276

MoHTR1

I, V

Kim et al. (2020)

MGG_10280

MoHTR2

I, V

Kim et al. (2020)

MGG_10595

GCF2

C, G, V

Cao et al. (2016)

MGG_10660

BZIP8

N

Kong et al. (2015) and Tang et al. (2015)

MGG_11116

FZC19

S

Lu et al. (2014)

MGG_11201

CREA

C, Cm, V

Cao et al. (2016), Cao et al. (2018), Hong et al. (2021) and Huang et al. (2023a)

MGG_11252

GCF3

C, G, V

Cao et al. (2016) and Huang et al. (2022b)

MGG_11346

CDTF1

C, G, M, P, V

Yan et al. (2011)

MGG_11712

HOX6

C, G

Kim et al. (2009)

MGG_11764

FZC55

A, S

Lu et al. (2014)

MGG_11925

ZFP14

A

Cao et al. (2016)

MGG_12037

FZC20

S

Lu et al. (2014)

MGG_12339

FZC82

A, S

Lu et al. (2014)

MGG_12349

CONX1

C, S, V

Lu et al. (2014)

MGG_12424

FZC21

G, S

Lu et al. (2014)

MGG_12560

MoEITF2, BZIP9

C, I, V

Kong et al. (2015), Tang et al. (2015) and Cao et al. (2022)

MGG_12776

FZC56

C, S

Lu et al. (2014)

MGG_12814

AP1

C, S, V

Guo et al. (2011), Kong et al. (2015), Tang et al. (2015) and Guo et al. (2019)

MGG_12865

HOX7

A, M, V

Kim et al. (2009), Osés-Ruiz et al. (2021) and Huang et al. (2022a)

MGG_12958

MST12, HOX8

A, I, V

Park et al. (2002), Park et al. (2004), Kim et al. (2009), Cao et al. (2016) and Osés-Ruiz et al. (2021)

MGG_13350

FZC57

C, S

Lu et al. (2014)

MGG_13360

CNF3

C

Lu et al. (2014)

MGG_13385

FZC58

S

Lu et al. (2014)

MGG_13629

FZC59

S

Lu et al. (2014)

MGG_13927

FZC83

G, S

Lu et al. (2014)

MGG_14175

FZC60

S

Lu et al. (2014)

MGG_14561

METR

G, C, Nm, V

Kong et al. (2015) and Tang et al. (2015)

MGG_14719

VELC

C, I, S, V

Kim et al. (2014)

MGG_14728

FZC48

N

Lu et al. (2014)

MGG_14806

ZFP5

G, V

Cao et al. (2016)

MGG_14816

FZC84

S

Lu et al. (2014)

MGG_14852

FZC61

C, S

Lu et al. (2014)

MGG_14931

VRF1, ZNF1

A, M, V

Cao et al. (2016), Yue et al. (2016), Huang et al. (2022a) and Wang et al. (2022)

MGG_15023

CNF2

C, S, V

Lu et al. (2014)

MGG_15139

FZC85

S

Lu et al. (2014)

MGG_15508

ZFP6

V

Cao et al. (2016)

MGG_15991

ZFP15

N

Cao et al. (2016)

MGG_16444

FZC22

C, S

Lu et al. (2014)

MGG_16756

FZC23

N

Lu et al. (2014)

MGG_17012

FZC86

S

Lu et al. (2014)

MGG_17060

FZC24

S

Lu et al. (2014)

MGG_17623

PCF1

C, S, V

Lu et al. (2014)

MGG_17669

FZC25

C

Lu et al. (2014)

MGG_17821

FZC26

C, S

Lu et al. (2014)

MGG_17841

GPF1

A, Cm, G, S, V

Lu et al. (2014)

MGG_17953

GCF5

C, G

Cao et al. (2016)