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Table 1 Likelihood ratio test results for Avr1c

From: Polymorphism in natural alleles of the avirulence gene Avr1c is associated with the host adaptation of Phytophthora sojae

Model Estimate parameters InLa Sites under selectionb Model comparison 2∆Lc χ2 Critical value Degree of freedom
M7 β p = 17.49869 − 935.39 Not allowed M7 v M8 31.61 9.21 2
q = 0.00500
M8 β + ω p0 = 0.69174 − 918.86 94 E 96 D 99 K 105 K 113 S 118 N     
p = 60.85475
q = 90.46392
p1 = 0.30826
ω = 8.13961
  1. aInL, log likelihood value
  2. bAmino acid sites inferred to be under positive selection with a probability > 99% are in bold
  3. cLikelihood ratio test: 2DL = 2 (InLalternative hypothesis –InLnull hypothesis)