Phytopathology Research

Table 1 Likelihood ratio test results for Avr1c

From: Polymorphism in natural alleles of the avirulence gene Avr1c is associated with the host adaptation of Phytophthora sojae

Model	Estimate parameters	InL^a	Sites under selection^b	Model comparison	2∆L^c	χ2 Critical value	Degree of freedom
M7 β	p = 17.49869	− 935.39	Not allowed	M7 v M8	31.61	9.21	2
M7 β	q = 0.00500	− 935.39	Not allowed	M7 v M8	31.61	9.21	2
M8 β + ω	p0 = 0.69174	− 918.86	94 E 96 D 99 K 105 K 113 S 118 N
	p = 60.85475
	q = 90.46392
	p1 = 0.30826
	ω = 8.13961

^aInL, log likelihood value
^bAmino acid sites inferred to be under positive selection with a probability > 99% are in bold
^cLikelihood ratio test: 2DL = 2 (InLalternative hypothesis –InLnull hypothesis)

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