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Table 1 miRNAs responsive to Magnaporthe oryzae or its elicitorsa

From: The roles of rice microRNAs in rice-Magnaporthe oryzae interaction

miRNALociMature length
(nt)
Mature isoformsTarget geneLiterature
miR1561320, 213SPL13 (LOC_Os07g32170); SPL18 (LOC_Os09g32944); SPL19 (LOC_Os11g30370); SPL14 (LOC_Os08g39890); SPL3 (LOC_Os02g04680); SPL4(LOC_Os02g07780)Campo et al. 2013; Li et al. 2014; Baldrich et al. 2015; Zhang et al. 2015; Li et al. 2016b; Wang et al. 2018a; Zhang et al. 2018
miR1596216GAmyb (LOC_Os01g59660, LOC_Os06g40330); Zinc finger (LOC_Os10g05230)Li et al. 2014; Xu et al. 2014; Li et al. 2016b
miR1606213ARF8 (LOC_Os02g41800); ARF10 (LOC_Os04g43910); ARF13 (LOC_Os04g59430); ARF18 (LOC_Os06g47150); ARF22 (LOC_Os10g33940)Campo et al. 2013; Li et al. 2014; Xu et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR1622212DCL1a (LOC_Os03g02970)Li et al. 2014; Zhang et al. 2015; Li et al. 2016b; Wang et al. 2018a; Zhang et al. 2018
miR1646214MTN4 (LOC_Os06g46270); MTN6 (LOC_Os08g10080); MTN5 (LOC_Os06g23650); MTN3 (LOC_Os12g41680); RGHIA; Salicylic acid-induced protein 19 (LOC_Os12g41680)Campo et al. 2013; Li et al. 2014; Xu et al. 2014; Li et al. 2016b; Wang et al. 2018a
miR16613216START domain-containing protein (LOC_Os03g01890); Homeobox-leucine zipper protein (LOC_Os03g43930, LOC_Os10g33960, LOC_Os12g41860); Vacuolar protein 8 (LOC_Os06g01304)Campo et al. 2013; Li et al. 2014; Xu et al. 2014; Zhang et al. 2015; Li et al. 2016b; Zhang et al. 2018
miR16710212ARF6 (LOC_Os02g06910); ARF12 (LOC_Os04g57610); ARF17 (LOC_Os06g46410); ARF25 (LOC_Os12g41950); Retinol dehydrogenase 14 (LOC_Os06g03830); Zinc finger protein 207 (LOC_Os09g38790)Liu et al. 2012; Campo et al. 2013; Li et al. 2014; Xu et al. 2014; Zhang et al. 2015; Li et al. 2016b;Wang et al. 2018a
miR168221, 243AGO1a (LOC_Os02g45070); AGO1b (LOC_Os04g47870); AGO1c (LOC_Os02g58490); AGO1d (LOC_Os06g51310)Campo et al. 2013; Li et al. 2014; Zhang et al. 2015; Li et al. 2016b
miR1691721, 229NF-YC1 (LOC_Os02g07450); NF-YC2 (LOC_Os03g14669); NF-YC3 (LOC_Os04g58680); NF-YC4 (LOC_Os06g45640); NF-YA11 (LOC_Os02g53620); NF-YA10 (LOC_Os12g42400)Campo et al. 2013; Li et al. 2014; Zhang et al. 2015; Li et al. 2016b; Wang et al. 2018a; Zhang et al. 2018
miR17192110SCARECROW gene regulator (LOC_Os06g01620, LOC_Os04g44360, LOC_Os04g46860); AP2 domain containing TF (ERF#043-ERF#073-ERF#090)Campo et al. 2013; Li et al. 2014; Xu et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR172420, 214Retrotransposon protein (LOC_Os05g43220); SSH1 (LOC_Os07g13170); ARF9 (LOC_Os04g36054); AP2-like factor (LOC_Os03g60430, LOC_Os04g55560, LOC_Os05g03040, LOC_Os07g13170); Putative zinc-finger motif (LOC_Os09g21770)Li et al. 2014; Xu et al. 2014; Baldrich et al. 2015; Li et al. 2016b; Wang et al. 2018a
miR319220, 211TCP21 (LOC_Os12g07480); myb proto-oncogene protein (LOC_Os01g59660)Xu et al. 2014; Li et al. 2016b; Zhang et al. 2018
miR390120, 212STRUBBELIG-RECEPTOR FAMILY 6 (LOC_Os03g51040); Wall-associated receptor kinase-like 10 (LOC_Os04g30060); Leucine-rich repeat family protein (LOC_Os04g45170)Campo et al. 2013; Li et al. 2016b
miR393221, 222TIR1 (LOC_Os05g05800); AFB2 (LOC_Os04g32460)Campo et al. 2013; Li et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR3941201FBX32 (LOC_Os01g69940); RNA polymerase sigma factor rpoD (LOC_Os05g51150)Campo et al. 2013; Li et al. 2016b; Wang et al. 2018a
miR3952521, 2210Cytochrome b5-like Heme/steroid binding domain containing protein (LOC_Os10g35870); Bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase (LOC_Os03g53230); Protein kinase domain containing protein (LOC_Os05g44290)Xu et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR396821, 225GRF6 (LOC_Os03g51970); GRF7 (LOC_Os12g29980); GRF8 (LOC_Os11g35030); GRF9 (LOC_Os03g47140); GRF2 (LOC_Os06g10310); GRF6 (LOC_Os03g51970); Deaminase (LOC_Os06g29430)Campo et al. 2013; Li et al. 2014; Zhang et al. 2015; Li et al. 2016b
miR3982212CSD1 (LOC_Os03g22810), CSD2 (LOC_Os07g46990), CSD3 (LOC_Os03g11960), CSD4 (LOC_Os08g44770)Campo et al. 2013; Li et al. 2014; Li et al. 2016b; Wang et al. 2018a
miR4351201COBRA-like protein precursor (LOC_Os07g41320) (predicted)Li et al. 2014; Baldrich et al. 2015; Li et al. 2016b; Zhang et al. 2018
miR43910211Chl9 (LOC_Os03g36540); Cyclin-dependent kinase G-1 (LOC_Os02g39010)Li et al. 2014; Xu et al. 2014; Li et al. 2016b
miR4446216MADS23 (LOC_Os08g33488); MADS27 (LOC_Os02g36924); MADS57 (LOC_Os02g49840)Campo et al. 2013; Li et al. 2014; Li et al. 2016b; Zhang et al. 2018
miR5282212Laccase (LOC_Os01g62600); Copper ion binding protein (LOC_Os01g03620, LOC_Os01g03640)Campo et al. 2013; Li et al. 2014; Li et al. 2016b
miR529220, 212SBP-box gene family member (LOC_Os02g07780)Campo et al. 2013; Baldrich et al. 2015; Li et al. 2016b
miR5301201Transcriptional regulator (LOC_Os05g34720); Expression protein (LOC_Os01g52920); Cyclin-T1–2; LORICRINLi et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR5351212Expressed protein (LOC_Os02g09080, LOC_Os03g14880); Squamosa promoter-binding-like protein 11 (LOC_Os06g45310)Li et al. 2014; Xu et al. 2014; Li et al. 2016b
miR8102213FBX160 (LOC_Os05g07950); Retrotransposon protein (LOC_Os02g38610) (predicted)Baldrich et al. 2015; Li et al. 2016b
miR8122221, 22, 2415Calcium/calmodulin dependent protein kinase (LOC_ Os03g22050)Li et al. 2014; Li et al. 2016b
miR818621, 223RDR2 (LOC_Os04g39160)Baldrich et al. 2015; Li et al. 2016b
miR8203211DRM2 (LOC_Os03g02010); Cellulose synthase like C12 (LOC_OS11g13650)Campo et al. 2013; Li et al. 2016b
miR8272212SPX-MFS1 (LOC_Os04g48390); SPX-MFS2 (LOC_Os02g45520); WAK receptor-like protein kinase (LOC_Os02g56370)Campo et al. 2013; Li et al. 2014; Li et al. 2016b
miR13192242LTPL6 (LOC_Os10g05720)Baldrich et al. 2015; Li et al. 2016b
miR13201211Ethylene-responsive transcription factor (LOC_Os10g41330); ANTHOCYANIDIN 3-O-glucosyltransferaseLi et al. 2014; Wang et al. 2018a
miR1423221, 242Expressed protein (LOC_Os11g28540); Heat shock protein DnaJ (LOC_Os06g09560)Baldrich et al. 2015; Li et al. 2016b
miR14251211Rf4 (LOC_Os10g35240); Rf6 (LOC_Os10g35436); Protein kinase (LOC_Os01g49614)Campo et al. 2013; Li et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR14271211YGL8 (LOC_Os01g17170)Xu et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR14301211ASYMMETRIC LEAVES 2 (LOC_Os05g34450); myb/SANT domain protein (LOC_Os03g13790)Campo et al. 2013; Li et al. 2016b
miR14331211NAD dependent epimerase/dehydratase family protein (LOC_Os09g15420), Retrotransposon protein (LOC_Os04g17640) (predicted)Li et al. 2014; Li et al. 2016b
miR1437221, 22, 243Ubiquitin carboxyl-terminal hydrolase domain containing protein (LOC_Os06g0184300); FAD2–1(LOC_Os02g48560)Xu et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR1846520, 21, 223Expression protein (LOC_Os08g10350); Anther-specific proline-rich protein (LOC_Os02g18870); Zinc-finger, C3H4 type domain containing TFBaldrich et al. 2015; Li et al. 2016b
miR1847221, 242AGO4b (LOC_Os04g06770)Baldrich et al. 2015; Li et al. 2016b
miR1850321, 223Pectinesterase inhibitor domain (LOC_Os08g04650); RDR2; NB-ARCCampo et al. 2013; Li et al. 2016b
miR1854121, 222Glucose-6-phosphate 1-dehydrogenase (LOC_Os03g20300) (predicted)Baldrich et al. 2015; Li et al. 2016b
miR18582211CSLC9-cellulose synthase-like family C (LOC_Os03g56060) (predicted)Baldrich et al. 2015; Li et al. 2016b
miR186115228Starch binding domain containing protein (LOC_Os01g63810); ATP binding protein (LOC_Os05g51790)Li et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR1862720, 244SART-1 family protein (LOC_Os02g30730)Zhang et al. 2015; Li et al. 2016b
miR1863323, 244Predicted expression protein (LOC_Os05g13804)Li et al. 2014; Li et al. 2016b; Wang et al. 2018a
miR18651242Aspartate aminotransferase (LOC_Os02g14110)Campo et al. 2013; Li et al. 2016b
miR18671241tRNA methyltransferase (LOC_Os10g30550)Li et al. 2014; Li et al. 2016b
miR18711241Ribosomal protein L7Ae (LOC_Os09g32976)Li et al. 2014; Li et al. 2016b
miR18741242Expression protein (LOC_Os02g20950)Li et al. 2014; Baldrich et al. 2015; Li et al. 2016b
miR18761241Esterase/lipase/thioesterase (LOC_Os02g31200)Campo et al. 2013; Li et al. 2016b
miR18791241Catalase isozyme B (LOC_Os06g51150)Campo et al. 2013; Li et al. 2016b
miR18828242ABC transporter, ATP-binding protein (LOC_Os11g39020) (predicted)Zhang et al. 2015; Li et al. 2016b
miR28712211Glycosyltransferase family 43 protein (LOC_Os10g13810); Zinc finger, C3HC4 type, domain containing TFXu et al. 2014; Baldrich et al. 2015
miR2873321, 243TKL_IRAK_CrRLK1L_1.4 (LOC_Os01g06280) (predicted)Li et al. 2014; Li et al. 2016b
miR28781242Plastocyanin-like domain containing protein (LOC_Os08g37670)Li et al. 2014; Li et al. 2016b
miR51501242Receptor-like protein kinase 2 precursor (LOC_Os01g70260)Li et al. 2016b; Zhang et al. 2018
miR51531241NHX1 (LOC_Os07g47100); Chloroplast ribonuclease III domain protein (LOC_Os01g59510)Li et al. 2016b; Wang et al. 2018a
miR57941211Rapid ALkalinization Factor14 (RALF14, LOC_Os11g26880); RALF4 (LOC_Os12g35670)Zhang et al. 2015; Li et al. 2016b
miR7695121, 245OsNramp6 (LOC_Os01g31870)Campo et al. 2013
  1. aThis list only includes those miRNAs that are functionally characterized or reported by two or more papers