Fig. 5

Recombination in full-length YMMV genome sequences. The graph at the top shows an YMMV genomic map. Locations of unique recombination events were identified by RDP4, in relation to the full-length sequence alignment of 12 YMMV isolates. Each full-length genome is represented by a long colored bar and the corresponding isolate name, given to the left of the bar. The figure shows a total of 4 unique recombination events, demarcated by the bars below the genomes that the recombinant fragments have been integrated into. When an ancestral unique recombination event can be found in more than one daughter sequence, the recombination event is displayed with all corresponding daughter sequences. Locations of the unique recombination events identified by RDP4, corresponding to the manually verified recombination sites, are shown with distinguished colored bars