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Table 1 Basic characteristics of genome assembly of Ustilaginoidea virens

From: Insights into genomic evolution from the chromosomal and mitochondrial genomes of Ustilaginoidea virens

Type

This version

Former version

Genome size

37.06

39.40

Contig N50

3,751,346

29,282

TE percentage

32.63%

25.25%

 -Percentage of Copia LTR Family

19.43%

 -Percentage of Gypsy LTR Family

8.18%

Gene number

8297

8426

 # Proteins with domains

5697

5463

 # Proteins with GO annotation

5832

5370

 # PHI-base proteins

2159

2158a

 # CAZy proteins

230

213

 # Secreted proteins

662

628

 # Conventional effectors

256

193

 # Non-conventional effectors

165

  1. “-” indicates that the data is unavailable
  2. aPHI-base proteins were re-predicted using the PHI database v4