Table 2 Comparison of COG assignments between the B. amyloliquefaciens group strains

C: Energy production and conversion

163

157

163

0.9541

0.8195

0.7734

D: Cell cycle control, cell division, chromosome partitioning

31

30

29

1

0.8974

0.8967

E: Amino acid transport and metabolism

242

240

232

0.8488

0.8855

0.7361

F: Nucleotide transport and metabolism

78

73

78

0.8689

0.8713

0.7413

G: Carbohydrate transport and metabolism

168

157

148

0.7749

0.417

0.6372

H: Coenzyme transport and metabolism

166

164

163

0.9096

0.9547

0.9545

I: Lipid transport and metabolism

71

72

72

0.7999

0.8654

1

J: Translation, ribosomal structure and biogenesis

159

148

164

0.7248

0.6463

0.4141

K: Transcription

184

177

179

0.9566

1

0.9563

L: Replication, recombination and repair

100

98

100

1

0.8855

0.9423

M: Cell wall/membrane/envelope biogenesis

160

161

158

0.863

0.9081

0.8626

N: Cell motility

21

20

21

1

1

1

O: Posttranslational modification, protein turnover, chaperones

89

86

88

1

0.9392

0.9386

P: Inorganic ion transport and metabolism

145

148

143

0.7185

0.9517

0.7634

Q: Secondary metabolite biosynthesis, transport and catabolism

59

36

37

0.02966

0.03925

1

R: General function prediction only

300

301

297

0.7301

0.8627

0.8627

S: Function unknown

294

290

289

0.8614

0.9303

0.965

T: Signal transduction mechanism

80

79

81

0.9359

0.8108

0.936

U: Intracellular trafficking, secretion and vesicular transport

26

26

26

1

1

1

V: Defense mechanism

46

44

46

1

0.9166

0.9154