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Table 2 Comparison of COG assignments between the B. amyloliquefaciens group strains

From: Organization, evolution and function of fengycin biosynthesis gene clusters in the Bacillus amyloliquefaciens group

Functional categories Core genomes p-value
Bv Ba Bs Bv vs Ba Bv vs Bs Ba vs Bs
C: Energy production and conversion 163 157 163 0.9541 0.8195 0.7734
D: Cell cycle control, cell division, chromosome partitioning 31 30 29 1 0.8974 0.8967
E: Amino acid transport and metabolism 242 240 232 0.8488 0.8855 0.7361
F: Nucleotide transport and metabolism 78 73 78 0.8689 0.8713 0.7413
G: Carbohydrate transport and metabolism 168 157 148 0.7749 0.417 0.6372
H: Coenzyme transport and metabolism 166 164 163 0.9096 0.9547 0.9545
I: Lipid transport and metabolism 71 72 72 0.7999 0.8654 1
J: Translation, ribosomal structure and biogenesis 159 148 164 0.7248 0.6463 0.4141
K: Transcription 184 177 179 0.9566 1 0.9563
L: Replication, recombination and repair 100 98 100 1 0.8855 0.9423
M: Cell wall/membrane/envelope biogenesis 160 161 158 0.863 0.9081 0.8626
N: Cell motility 21 20 21 1 1 1
O: Posttranslational modification, protein turnover, chaperones 89 86 88 1 0.9392 0.9386
P: Inorganic ion transport and metabolism 145 148 143 0.7185 0.9517 0.7634
Q: Secondary metabolite biosynthesis, transport and catabolism 59 36 37 0.02966 0.03925 1
R: General function prediction only 300 301 297 0.7301 0.8627 0.8627
S: Function unknown 294 290 289 0.8614 0.9303 0.965
T: Signal transduction mechanism 80 79 81 0.9359 0.8108 0.936
U: Intracellular trafficking, secretion and vesicular transport 26 26 26 1 1 1
V: Defense mechanism 46 44 46 1 0.9166 0.9154
  1. Bv, Ba and Bs represent B. velezensis, B. amyloliquefaciens and B. siamensis, respectively