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Table 1 The region in the CoYVV genome corresponding to the recombination breakpoint detected by at least six different methods in the RDP4 package

From: Molecular characterization of a novel Conyza canadensis-infecting begomovirus in China

Recombination breakpoint

Potential parent sequence#

P-value

Methods used to detect recombination*

Major

Minor

2089–2677

TYLCVYnV (KU933255)

TYLCCNV (AM260701)

3.121 × 10−25

R, G, B, M, C, S

  1. R, RDP; G, GeneConv; B, Bootscan; M, MaxChi; , CHIMAERA; S, SiScan; 3S, 3SEQ; TYLCYnV, tomato yellow leaf curl Yunnan virus (GenBank Accession No. KU933255); TYLCCNV, tomato yellow leaf curl China virus (GenBank accession no. AM260701)
  2. #Major parent refers to the parental isolate that contributes a larger fraction of the recombined sequence as compared to the minor parent
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Phytopathology Research

ISSN: 2524-4167