Table 2 Summary of Aphelenchoides besseyi transposable elements (TE) annotation statistics based on different reference databases and methods
TE types | Repbase TEs | TE proteins | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (kb) | % genome | Length (kb) | % genome | Length (kb) | % genome | Length (kb) | % genome | |
DNA | 599 | 1.19 | 1500 | 2.98 | 2386 | 4.74 | 2902 | 5.77 |
LINE | 130 | 0.26 | 378 | 0.75 | 558 | 1.11 | 714 | 1.42 |
SINE | 2 | 0.004 | 0 | 0 | 0 | 0 | 2 | 0.004 |
LTR | 255 | 0.51 | 483 | 0.96 | 1931 | 3.84 | 2126 | 4.23 |
Unknown | 2 | 0.004 | 0 | 0 | 4935 | 9.81 | 4936 | 9.81 |
Total | 988 | 1.97 | 2361 | 4.69 | 9810 | 19.5 | 10,680 | 21.2 |