Transcriptome analysis reveals pathways facilitating the growth of tobacco powdery mildew in Arabidopsis

Li, Ran; Zhang, Ling-Li; Yang, Xue-Mei; Cao, Xiao-Long; Wang, Ying-Ge; Ma, Xian-Feng; Chandran, Viswanathan; Fan, Jing; Yang, Hui; Shang, Jing; Zhao, Ji-Qun; Xiao, Shunyuan; Li, Yan; Wang, Wen-Ming

doi:10.1186/s42483-019-0012-z

Phytopathology Research

Table 1 GO enrichment of genes expressed higher in Col-0 or in pad4–1 sid2–1 over the time course

From: Transcriptome analysis reveals pathways facilitating the growth of tobacco powdery mildew in Arabidopsis

GO term	Total	Higher in Col-0							Higher in pad4–1 sid2–1
GO term	Total	T0	T1	T3	T6	T8	T10	T12	T0	T1	T3	T6	T8	T10	T12
PTI
Receptor protein kinase signaling pathway	522			15	9	10	20	33
MAPK cascade	86	8	10	13	10	10	14	20
Protein kinase activity	1110	17		31	19	22	34	56
SA-associated
SA-mediated signaling pathway	62			7	4	4	7	12
SA biosynthetic process	79	13	8	18	11	13	16	26
Systemic acquired resistance	125	12	9	27	18	23	26	34
Response to SA	152	5	6	9	7	9	15	18
JA-mediated signaling pathway	99	5	5	9	8	9	13	18
Defense response	464	7		10				19
Defense response to fungus	488	11	13	24	16	17	26	34					8
Defense response, incompatible interaction	41		4	4	4	4	4	8
Regulation of defense response	66		4	8	5	6	7	8
Regulation of plant-type HR	121	5	5	12	7	7	11	17
Senescence	64		2		2	2		6
Others
Response to chitin	234	6	5	11	6		14	27	5			7	8	5	3
Protein targeting to membrane	124	5	5	12	7	7	11	17
Response to ER stress	82		4	7	6	6	7	9
Response to oxidative stress	260						12	14
Calcium ion binding	282			8		7	10	14
ATP binding	2406			28				56
Abscisic acid-activated signaling pathway	215							11
Plasmodesma	1369			29	16	17	29	50
Apoplast	449			10	8	10	12						8
Detection of biotic stimulus	25	7	4	9	6	7	9	13
Vacuole	572			12
Detoxification
Toxin catabolic process	89											8	6	4	4
Response to toxic substance	67											8	3	4	5
Proline transport	38											6	4	5	4
Amino acid transport	53											4	3	4	2
Glutathione transferase activity	53											5	2	3	3
Flavonoid biosynthetic process	144											6	4	6	7
Flavonoid glucuronidation	114											6	3	4	4
Flavonol biosynthetic process	12												2	2	3
UDP-glucosyltransferase activity	24											5	3	2
Intracellular membrane-bounded organelle	157											7	3	4	5
Quercetin 3-O-glucosyltransferase activity	112											6	3	4	4
Secondary metabolism
Apoplast	449											8	8	6	6
Chitin binding	25											3	3	2	3
Chitin catabolic process	26											3	4	2	3
Chitinase activity	25											3	3	2	3
Indole glucosinolate metabolic process	25												4	1	2
Response to nitrate	81											2	5	3	3
Response to other organism	27											3	3	6	7
Cellular response to hydrogen peroxide	4											2	2	1
Intracellular membrane-bounded organelle	157											7	3	4	5

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