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Table 1 GO enrichment of genes expressed higher in Col-0 or in pad4–1 sid2–1 over the time course

From: Transcriptome analysis reveals pathways facilitating the growth of tobacco powdery mildew in Arabidopsis

GO term Total Higher in Col-0 Higher in pad4–1 sid2–1
T0 T1 T3 T6 T8 T10 T12 T0 T1 T3 T6 T8 T10 T12
PTI
 Receptor protein kinase signaling pathway 522    15 9 10 20 33        
 MAPK cascade 86 8 10 13 10 10 14 20        
 Protein kinase activity 1110 17   31 19 22 34 56        
SA-associated
 SA-mediated signaling pathway 62    7 4 4 7 12        
 SA biosynthetic process 79 13 8 18 11 13 16 26        
 Systemic acquired resistance 125 12 9 27 18 23 26 34        
 Response to SA 152 5 6 9 7 9 15 18        
 JA-mediated signaling pathway 99 5 5 9 8 9 13 18        
 Defense response 464 7   10     19        
 Defense response to fungus 488 11 13 24 16 17 26 34      8   
 Defense response, incompatible interaction 41   4 4 4 4 4 8        
 Regulation of defense response 66   4 8 5 6 7 8        
 Regulation of plant-type HR 121 5 5 12 7 7 11 17        
 Senescence 64   2   2 2   6        
Others
 Response to chitin 234 6 5 11 6   14 27 5    7 8 5 3
 Protein targeting to membrane 124 5 5 12 7 7 11 17        
 Response to ER stress 82   4 7 6 6 7 9        
 Response to oxidative stress 260       12 14        
 Calcium ion binding 282    8   7 10 14        
 ATP binding 2406    28     56        
 Abscisic acid-activated signaling pathway 215        11        
 Plasmodesma 1369    29 16 17 29 50        
 Apoplast 449    10 8 10 12       8   
 Detection of biotic stimulus 25 7 4 9 6 7 9 13        
 Vacuole 572    12            
Detoxification
 Toxin catabolic process 89            8 6 4 4
 Response to toxic substance 67            8 3 4 5
 Proline transport 38            6 4 5 4
 Amino acid transport 53            4 3 4 2
 Glutathione transferase activity 53            5 2 3 3
 Flavonoid biosynthetic process 144            6 4 6 7
 Flavonoid glucuronidation 114            6 3 4 4
 Flavonol biosynthetic process 12             2 2 3
 UDP-glucosyltransferase activity 24            5 3 2  
 Intracellular membrane-bounded organelle 157            7 3 4 5
 Quercetin 3-O-glucosyltransferase activity 112            6 3 4 4
Secondary metabolism
 Apoplast 449            8 8 6 6
 Chitin binding 25            3 3 2 3
 Chitin catabolic process 26            3 4 2 3
 Chitinase activity 25            3 3 2 3
 Indole glucosinolate metabolic process 25             4 1 2
 Response to nitrate 81            2 5 3 3
 Response to other organism 27            3 3 6 7
 Cellular response to hydrogen peroxide 4            2 2 1  
 Intracellular membrane-bounded organelle 157            7 3 4 5