Fig. 2

Phylogeny and ortholog distribution in Plasmodiophora brassicae and other species. a The phylogeny was constructed by the maximum likelihood method from a concatenated alignment of 90 single-copy orthologs conserved across species. The scale bar of branch length represents 0.2 amino acid-substitutions/site, and the bootstrap values are indicated on nodes (the value of 1 was omitted). Different subphylum branches are highlighted as follows: Rhizaria, red; Chromalveolata, dark blue; plants, light green; amoebozoa, light purple; animals, dark orange; fungi, light blue. b The colored bars represent orthologous proteins identified using OrthoMCL in the species shown in A. The bars are divided into 3 categories: present in all species (green), absent in at least one other species (blue), species-specific (orange)