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Table 1 The updated PL3-coding gene complement in P. sojae genome

From: Comparative expression analysis of Phytophthora sojae polysaccharide lyase family 3 (pectate lyase) genes during infection of the soybean Glycine max

Transcript ID (JGIDOE)

Gene model name (JGIDOE)

Gene location (Scaffold: coordinates)

Gene length (bp)

Transcript accession number (GenBank)

250,480

Physo2.s_448557

2: 8065616–8,066,365

750

XM_009522292.1

490,338

e_gw1.3.5975.1

3: 616457–617,545

1089

XM_009523709.1

496,500

e_gw1.3.444.1

3: 629376–631,094

1719

XM_009523712.1

496,964

e_gw1.3.1590.1

3: 637957–639,675

1719

XM_009523714.1

331,456

gm1.9368_g

3: 8062164–8,062,970

807

XM_009526324.1

496,814

e_gw1.3.12703.1

3: 8334020–8,334,784

765

XM_009526391.1

493,125

e_gw1.3.400.1

3: 8378758–8,381,136

2379

XM_009526401.1

491,970

e_gw1.3.10053.1

3: 8792464–8,793,633

1170

XM_009526560.1

496,434

e_gw1.3.1590.1

3: 8800161–8,801,378

1218

XM_009526562.1

336,457

gm1.14369_g

6: 690515–691,315

801

XM_009532098.1

342,862

gm1.20774_g

13: 1387994–1,388,905

912

XM_009539509.1

251,859

Physo2.s_451592

13: 1398588–1,399,443

856

XM_009539513.1

  1. A total of 12 putative PL3-coding gene models were identified. Gene models encoding transcripts XM_009523712.1 and XM_009523714.1 have 100% nucleotide similarity. Therefore, expression analysis could be performed on 11 sequences, only. All of the gene models were confirmed to contain the PFAM domain PF03211, characteristic of the pectate lyase family. Transcript XM_009526560.1 (1170 bp) is located within a larger ORF (1317 nt) in the complementary strand