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Table 1 The updated PL3-coding gene complement in P. sojae genome

From: Comparative expression analysis of Phytophthora sojae polysaccharide lyase family 3 (pectate lyase) genes during infection of the soybean Glycine max

Transcript ID (JGIDOE) Gene model name (JGIDOE) Gene location (Scaffold: coordinates) Gene length (bp) Transcript accession number (GenBank)
250,480 Physo2.s_448557 2: 8065616–8,066,365 750 XM_009522292.1
490,338 e_gw1.3.5975.1 3: 616457–617,545 1089 XM_009523709.1
496,500 e_gw1.3.444.1 3: 629376–631,094 1719 XM_009523712.1
496,964 e_gw1.3.1590.1 3: 637957–639,675 1719 XM_009523714.1
331,456 gm1.9368_g 3: 8062164–8,062,970 807 XM_009526324.1
496,814 e_gw1.3.12703.1 3: 8334020–8,334,784 765 XM_009526391.1
493,125 e_gw1.3.400.1 3: 8378758–8,381,136 2379 XM_009526401.1
491,970 e_gw1.3.10053.1 3: 8792464–8,793,633 1170 XM_009526560.1
496,434 e_gw1.3.1590.1 3: 8800161–8,801,378 1218 XM_009526562.1
336,457 gm1.14369_g 6: 690515–691,315 801 XM_009532098.1
342,862 gm1.20774_g 13: 1387994–1,388,905 912 XM_009539509.1
251,859 Physo2.s_451592 13: 1398588–1,399,443 856 XM_009539513.1
  1. A total of 12 putative PL3-coding gene models were identified. Gene models encoding transcripts XM_009523712.1 and XM_009523714.1 have 100% nucleotide similarity. Therefore, expression analysis could be performed on 11 sequences, only. All of the gene models were confirmed to contain the PFAM domain PF03211, characteristic of the pectate lyase family. Transcript XM_009526560.1 (1170 bp) is located within a larger ORF (1317 nt) in the complementary strand