Table 3 Recombination crossover sites in YMMV genomes detected by RDP4
From: Genetic diversity and genome recombination in Yam mild mosaic virus isolates
Parental sequences | ||||||
|---|---|---|---|---|---|---|
Event No. | Found in | Recombinant | Major | Minor | Detecting methodsa | P values |
I | 1 | NC1 | NN1 | NC2 | R G B M C | 7.741 × 10−13, 8.558 × 10−14, 6.872 × 10− 13, 2.670 × 10−3, 2. 442 × 10−3 |
II | 1 | CN1 | WX1 | NC3 | R B C S | 1.066 × 10−6, 6.842 × 10−10, 1.148 × 10−10, 3.226 × 10−5 |
III | 1 | NC2 | FX1 | WX3 | M C S 3 | 3.367 × 10−11, 4.606 × 10−13, 2.116 × 10−6, 5.180 × 10−7 |
IV | 1 | CN20 | WX1 | NC3 | R B M C | 4.927 × 10−3, 1.287 × 10−2, 6.484 × 10−6, 5.180 × 10− 7 |