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Table 2 Role of HTS in uncovering novel and emerging pathogens

From: High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives

Advantages

Description

Implications

Reference

Uncovering novel pathogens

HTS uncovers unknown pathogens by detecting and analyzing genetic material directly from infected samples

Facilitates the discovery of new pathogens, providing valuable insights into their biology, ecology, and potential impact

Suminda et al. (2022)

Identifying new strains/variants

HTS can detect genetic mutations/variations within pathogen populations

Allows for monitoring pathogen evolution, informing disease management strategies to ensure effectiveness

Pandey and Szpara (2019)

Understanding host–pathogen interactions

HTS enables the analysis of the genetic material of both the host and pathogen, providing a comprehensive view of their interactions

Assists in identifying factors influencing infection, transmission, and host resistance

Karamitros et al. (2021)